If you’re craving a cozy, fall-inspired snack that’s also packed with protein, these Pumpkin Protein Muffins are a must-try! Soft, fluffy, and perfectly spiced, they’re a healthier alternative to traditional muffins. Whether you enjoy them for breakfast, post-workout fuel, or a guilt-free dessert, this recipe delivers the perfect balance of flavor and nutrition.
Table of Contents
At a Glance
- Servings: 12 muffins
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Total Time: 30 minutes
- Difficulty: Easy
- Estimated Cost: $8–$10
Ingredients

- 1 cup (240 g) canned pumpkin puree (not pumpkin pie filling)
- 2 large eggs
- ½ cup (120 ml) unsweetened almond milk (or regular milk)
- ¼ cup (60 ml) maple syrup or honey
- 1 tsp vanilla extract
- 1 ½ cups (150 g) oat flour (or blend rolled oats in a blender)
- 1 scoop (30 g) vanilla protein powder (whey or plant-based)
- 1 tsp baking powder
- ½ tsp baking soda
- 2 tsp pumpkin pie spice (or mix cinnamon, nutmeg, ginger, and cloves)
- Pinch of salt
- Optional add-ins: ¼ cup mini chocolate chips, chopped nuts, or dried cranberries
Ingredient Notes & Swaps:
- Protein powder: Use a neutral or vanilla flavor for best results.
- Sweetener: Swap maple syrup with honey or a sugar-free syrup for fewer carbs.
- Milk: Any non-dairy milk works if you want this recipe dairy-free.
Step-by-Step Instructions
- Preheat & Prep: Preheat your oven to 350°F (175°C). Line a muffin tin with paper liners or spray with nonstick cooking spray.
- Mix Wet Ingredients: In a large mixing bowl, whisk together pumpkin puree, eggs, almond milk, maple syrup, and vanilla until smooth.

- Combine Dry Ingredients: In a separate bowl, stir together oat flour, protein powder, baking powder, baking soda, pumpkin pie spice, and salt.
- Make the Batter: Slowly add the dry ingredients to the wet mixture, stirring until just combined. Do not overmix. Fold in optional add-ins if desired.

- Fill Muffin Tin: Divide the batter evenly among the muffin cups, filling each about ¾ full.

- Bake: Bake for 18–22 minutes, or until a toothpick inserted into the center comes out clean.
- Cool & Enjoy: Let muffins cool in the pan for 5 minutes, then transfer to a wire rack. Enjoy warm or at room temperature.
Pro Tips & Variations
- For extra moisture, add 2 tbsp of Greek yogurt to the batter.
- Make them nutty by mixing in chopped walnuts or pecans.
- For a chocolatey version, use chocolate protein powder and add cocoa powder.
- Freeze extras in a zip-top bag for easy grab-and-go snacks.
Serving Suggestions

- Enjoy warm with a smear of almond butter.
- Pair with Greek yogurt and fresh fruit for a protein-packed breakfast.
- Pack one in your lunchbox as a healthy midday pick-me-up.
Storage & Reheating
- Room Temperature: Store in an airtight container up to 3 days.
- Fridge: Keeps well up to 1 week.
- Freezer: Freeze for up to 3 months. Thaw overnight in the fridge or microwave for 30 seconds.
Troubleshooting
- Muffins too dry? Check protein powder type some absorb more liquid. Add an extra splash of milk.
- Didn’t rise well? Make sure your baking powder and soda are fresh.
- Too dense? Don’t overmix the batter gentle folding keeps muffins fluffy.